PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040620t1
Common NameTCM_040620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 455aa    MW: 51226.4 Da    PI: 5.5809
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040620t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81.1e-21121217185
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +Wt++ v++Li+++  ++++   +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++
  Thecc1EG040620t1 121 KWTDNVVRLLIAVVACVGDDGMIEGvegpkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPSL 213
                       7**************888888854334556667888**********************************************66999999999 PP

          trihelix  82 fdql 85 
                        d++
  Thecc1EG040620t1 214 MDSM 217
                       9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-18119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MENSGLGGGF LSGPNGGLFD LESSINRQQK PQLGQPSLIP HHNMVLMSEN DHRSTGVMEA  60
KGCNPKGFPM NFGKGKGVSP ISAMNNGSMS EEDEPSYIED GNGENSIGGK GKKGSPWQRM  120
KWTDNVVRLL IAVVACVGDD GMIEGVEGPK RKSGILQKKG KWKTVSKIMI SKGCHVSPQQ  180
CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PSLMDSMPHL SAKAKDDVKK ILSSKHLFYP  240
EMCAYHNGQR IPNCQDLDLQ GCFVPLDRCL KDNNGSDEEE AEGNDDSEDD DEMDNEDDNN  300
ADGDDERIGE LNKRKKASAE EGHFWSQSAE QDSLKVEMAG IFHDPTRSSL ERKEWIKRQI  360
LQLQEERVNL QVEGFELEKQ RFKWLRYCNK KGRELERLRL ENERMRLENE RSLLQLRQKE  420
LEVGFRSSDA SLDPTSLGID RLQSRDQIDL GRHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014993.10.0Sequence-specific DNA binding transcription factors
TrEMBLA0A061GTX70.0A0A061GTX7_THECC; Sequence-specific DNA binding transcription factors
STRINGVIT_07s0031g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-69sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]